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Microbiology and Parasitology, Optometry Notes, Optometry Semester 2

Gram negative bacteria session 4

OPTOMETRY · SEMESTER 2 Gram negative bacteria session 4 Microbiology and Parasitology START READING NOTES Contents of This Topic CONCEPTS ON GRAM NEGATIVE BACTERIA Objectives Definition of Gram-Negative Bacteria LIST GRAM NEGATIVE BACTERIA OF MEDICAL IMPORTANCE Identify characteristic of gram negative bacteria of ocular importance Identify characteristic of gram negative bacteria of ocular importance continue Characteristics of Gram-Negative Cocci EYES DISEASES CAUSED BY GRAM NEGATIVE BACTERIA OF OCULAR IMPORTANCE Neisseria spp under gram stain Classification of gram-negative bacilli (rods) of medical importance According to animal source Characteristics of vibrio cholera and Escherichia coli Vibrio Cholera Vibrio cholerae on gram stain Characteristics of E.coli Escherichia coli on gram stain E.coli Haemophilus Species [Haemophilus Influenza and Haemophilus Ducreyi] Key Points Evaluation References CONCEPTS ON GRAM NEGATIVE BACTERIA Gram Negative Bacteria of Medical Importance Objectives Define gram negative bacteria List Gram Negative bacteria of medical importance Identify characteristic of gram negative bacteria of ocular importance Mention eyes diseases caused by gram negative bacteria of ocular importance List laboratory diagnosis, diseases caused and drug of choice for gram negative cocci bacteria 2 Definition of Gram-Negative Bacteria Gram negative bacteria: Bacteria which appears red, after losing the colour of primary Stain and adapting the colour of a counter stain (dilute carbofuchsin or safranin, or neutral red) when stained by gram stain. examples of gram-negative bacteria of medical importance are Neisseria species,Salmonella species, haemophilus species, and vibrio cholera. 3 LIST GRAM NEGATIVE BACTERIA OF MEDICAL IMPORTANCE Neisseria Gonorrhoea Pseudomonas aeruginosa Escherichia coli Chlamydia trachomatis Klebsiella pneumoniae Haemophilus influenzae Moraxella species 4 Identify characteristic of gram negative bacteria of ocular importance Cell wall structure .they have a thin peptidoglycan layer much thinner gram positive bacteria, possess an outer membrane outside the peptidoglycan. Outer membrane present. cointains lipopolysaccharide (LPS), which is a major virulence factor. Periplasmic space: Lies between inner and outer membranes, containing enzymes that can contribute to antibiotic resistance. Staining property: Do not retain crystal violet stain during Gram staining, take up the counterstain (safarin) in appear pink/red under the microscope 5 Identify characteristic of gram negative bacteria of ocular importance continue Virulence factors (important in eye infections) Endotoxin (LPS):Can trigger severe inflammation in contributes to corneal damage and intraocular inflammation. Exotoxins and enzymes: some produce proteases and toxins that destroy corneal tissue. Biofilm formation: particularly relevant in contact lens- related infections. Antibiotic resistance Outer membrane acts as a barrier to many antibiotics Often possess β-lactamases and other resistance mechanisms Makes infections harder to treat compared to Gram positive organisms 6 Characteristics of Gram-Negative Cocci Bean shaped cocci The pathogenics are intracellular (they live inside the host cell normally Polymorphonuclear cells like macrophages) Oxidase positive Have pilli Non motile Non sporing 7 EYES DISEASES CAUSED BY GRAM NEGATIVE BACTERIA OF OCULAR IMPORTANCE Species Diseases They Cause Symptoms Drug of Choice Neisseria Gonorrhoea (gonococci) Human cell is the only host Beta lactamase group Bacteria conjunctivitis (Pink Eye) Note: Neisseria Gonorrhoeae can caused hyperacute, severe from that may damage the cornea quickly Redness, discharge (often purulent),irritation Doxycycline Azithromycin Pseudomonas aeruginosa Keratitis (Corneal infection) Ciprofloxacin 8 Neisseria spp under gram stain 9 Classification of gram-negative bacilli (rods) of medical importance According to the site of infection Those related to gastrointestinal tract examples, Eschelichia colli, Salmonella species, shigella species, Vibrio species (Enterobacteriaceae) Those related to respiratory tract example, haemophilus species, pseudomonas aeruginosa, Related to reticulo endothelial organs like liver and spleen example, brucella species 10 According to animal source Those which are transmitted from animals to humans (zoonotic organisms) examples brucella species and yersinia species 11 Characteristics of vibrio cholera and Escherichia coli V.Cholerae Curved, comma shaped gram-negative rod Oxidase positive Motile Tolerant to alkaline environment Grows rapidly in the ph range of 7.4 to 9.6 Facultative anaerobe 12 Vibrio Cholera 13 Vibrio cholerae on gram stain 14 Characteristics of E.coli Motile with or without capsule Facultative anaerobe Capable of growing at 44 degree centigrade Lactose fermentors 15 Escherichia coli on gram stain 16 E.coli 17 EYES DISEASES CAUSED BY GRAM NEGATIVE BACTERIA OF OCULAR IMPORTANCE Species Diseases they Cause Lab Diagnosis Drug of Choice Chlamydia trachomatis Trachoma Chronic infection leading to scarring of the eyelid and cornea A leading caused of preventable blindness in some regions Tetracycline Erythromycin Doxycycline E. Coli Klebsiella pneumoniae Endophthalmitis several infection inside the eye (often after surgery or trauma) Pain ,vision loss, redness This is a medical emergency Ceftazidime 18 EYES DISEASES CAUSED BY GRAM NEGATIVE BACTERIA OF OCULAR IMPORTANCE Species Diseases They Cause Symptom Drug of Choice Haemophilus influenzae Moraxella species Orbital Cellulitis Moraxella keratitis Infection of tissues around the eye Symptoms: swelling ,pain , fever, reduce eye movement Peripheral cornea ulcer Chloromphenical Co-trimoxazole Ciprofloxacin 19 Haemophilus Species [Haemophilus Influenza and Haemophilus Ducreyi] General Characteristics Small non motile Gram negative coccobacillae (rods with round ends) Aerobic Capsulated 20 Key Points Gram negative bacteria lose the colour of primary stain and adapt the colour of secondary (Counter stain) stain. There is a large group of gram-negative bacteria but only some causes diseases to man, Including neisseria spp, haemophilus spp, vibrio. Gonorhoea, N.Meningitids, vibrio Cholera. Most of these organisms are diagnosed by doing gram staining, culture, serological tests 21 Evaluation What is the gram-negative bacteria related to gastrointestinal tract? Which specimen is collected in order to diagnose cholera? What are the diseases caused by neisseria gonorrhoea? 22 References Becker, F.J. & Silverton, R.E. (1985). Introduction to medical laboratory technology (6th ed.) London: butterworth. Brooks, g.F., Butel, J.S., Morse, S.A. Et al, (2007). Medical microbiology (24th ed.). NewYork: mcgraw- hill. Cook, g. (2000). Manson’s tropical diseases (22nd ed.). London: wb saunders Company ltd., Greenwood, d., Richard, C.B.S, & john, F.P. (1992). Medical microbiology (4th ed). Hong kong: uk: elbs with churchill livingstone, medical division of longmanGroup, UK ltd. Jawetz, melnick, & adelberg's. (2007). Medical microbiology (4th ed.). United states of America: the mcgraw-hill companies, 23 24 ← PREVIOUS TOPICNEXT TOPIC →VIEW MODULE NOTESVIEW SEMESTER NOTESALL OPTOMETRY NOTES Need These Notes as PDF? Request a formatted copy for offline study, printing or revision. GET PDF NOTES

Microbiology and Parasitology, Optometry Notes, Optometry Semester 2

Normal Flora

OPTOMETRY · SEMESTER 2 Normal Flora Microbiology and Parasitology START READING NOTES Contents of This Topic Learning Objectives Definition of terms Definition of terms cont.. Types of normal flora Based on Relationship with the Host Based on Location in the Body Normal flora found in different body parts Normal flora found in different body parts cont.. Normal flora found in different body parts cont… Normal flora found on body parts cont… Normal flora found on body parts cont.… The body parts without normal flora The body parts without normal flora cont…. The body parts without normal flora cont… Advantages of normal flora Disadvantages of normal flora Disadvantages of normal flora cont.. Pathogen Classification of pathogens Characteristics of pathogens Characteristics of pathogens cont.. Questions NORMAL FLORA AND PATHOGENS Learning Objectives By the end of this session, students are expected to be able to: Define normal flora, mycology, pathogen and vector Identify normal flora found in different body parts Explain the importance of normal flora Describe the classification and general characteristics of pathogens of medical importance Definition of terms Normal flora : Microorganisms (mostly bacteria, but also fungi and viruses) that naturally live on or inside the human body without causing disease. They can be commensalisms or mutualists with regard to the hosts. Basically, normal flora do not harm the host however can provide the benefits to the hosts NOTE: Normal flora can cause disease when the defense mechanisms of the body is breached or when the micro-organism is placed in the abnormal body site or dislocated Definition of terms cont.. Pathogen: Is an organism which is capable of causing pathological condition to another organism. Vector: Is an organism that conveys pathogens from one host to another. Infection: refers to the invasion of the pathogen into the body . Host : is an organism affected by the pathogen Note : for the disease to be caused by the pathogen the host body should be susceptible to infection Definition of terms cont.. Mycology :Is the branch of microbiology which deals with the study of fungi Virology: Is branch of microbiology which deals with the study of virus Bacteriology : the branch of microbiology which deals with the study of bacteria Types of normal flora Normal flora, also known as microbiota, can be categorized based on their relationship with the host and their location in or on the body. Normal flora can live permanently, temporary or just become infective when the immunity becomes compromised . Based on Relationship with the Host Type Description Resident Flora Long-term, stable microbes that consistently inhabit specific body sites. Transient Flora Temporary microbes that may colonize for short periods but do not persist. Opportunistic Flora Normally harmless but can cause disease if the host's defenses are compromised. Based on Location in the Body Body Site Common Microbes Found Skin Staphylococcus epidermidis, Corynebacterium, Propionibacterium Nose/Nasopharynx Staphylococcus aureus, Streptococcus pneumoniae Mouth/Oral Cavity Streptococcus mutans, Lactobacillus, Actinomyces Gastrointestinal Tract Escherichia coli, Bacteroides, Enterococcus, Clostridium Vagina Lactobacillus, Candida, Gardnerella Urethra (distal) Staphylococcus epidermidis, Enterococcus, Corynebacterium External Ear Staphylococcus, Corynebacterium, Propionibacterium Normal flora found in different body parts Normal flora tends to be commensal or mutual symbionts adapted to the special conditions found in various body locations. Normal flora are found mostly in : o skin o Eyes o Nose, pharynx and tonsils o In mouth and oral cavity o In urethra o In lower GIT o Urogenital tract o External ear Normal flora found in different body parts Skin Staphylococcus spp e.g. S.epidermidis, S.aureus Corynebacteria spp Propionibacterium spp Fungi Note the most common is s.epidermidis Normal flora found in different body parts cont.. Eyes Staphylococcus epidermidis and s.aureus Neisseria species. Haemophilus influenzae Corynebacteria spp Streptococcus species (viridans group) Propionibacterium spp Normal flora found in different body parts cont… Nose Staphylococcus epidermidis Staphylococcus aureus Streptococcus spp Neisseria sp. Haemophilus influenzae Corynebacteria sp Micrococcus spp Normal flora found in different body parts cont… Mouth and pharynx Staphylococcus epidermidis Staphylococcus aureus Streptococcus spp Neisseria sp. Haemophilus influenza Corynebacteria Lactobacillus spp Yeast e.g. candida albicans Enterococcus faecalis Actinomycetes Spirochetes Mycoplasmas Normal flora found in different body parts cont… Urethra Staphylococcus epidermidis, S.aureus Streptococcus mitis Enterococcus faecalis Neisseria sp Corynebacteria Mycoplasmas Normal flora found in different body parts cont… Lower GIT Staphylococcus epidermidis, S.aures Clostridium spp Lactobacillus Klebsiella spp Streptococcus mitis Enterococcus faecalis Escherichia coli Proteus sp Bacteroides spp Bifidobacterium bifidum Spirochetes Mycoplasmas Normal flora found on body parts cont… Vagina Streptococcus spp Staphylococcus spp Enterococcus faecalis Neisseria spp. Lactobacillus spp Corynebacterium Mycoplasma Candida albicans Normal flora found on body parts cont.… External ear Bacterial Flora Staphylococcus epidermidis – a dominant skin commensal Staphylococcus aureus – may be present in small numbers Corynebacterium species – part of the skin microbiota Propionibacterium acnes (now Cutibacterium acnes) – associated with sebaceous glands Alpha-hemolytic streptococci – including Streptococcus mitis and Streptococcus sanguinis Candida species – occasionally present, especially in moist environments Malassezia species – lipid-dependent yeasts found on skin The body parts without normal flora While many areas are colonized by these microbes, some body parts are typically sterile under normal conditions, meaning they do not harbor normal flora. Here are the major body sites that are normally sterile: Central Nervous System Brain Spinal cord Cerebrospinal fluid (CSF) The body parts without normal flora cont…. Cardiovascular System Heart Blood vessels Blood Lower Respiratory Tract Trachea Bronchi Alveoli (lungs) The body parts without normal flora cont… Internal Organs and Tissues Liver Kidneys Pancreas Spleen Muscles Bones The body parts without normal flora cont… Body Fluids Urine (from the kidneys and bladder — not the urethra) Amniotic fluid Synovial fluid (in joints) Peritoneal fluid Pleural fluid Eyes Internal structures like the aqueous humor and vitreous body The body parts without normal flora cont… Reproductive System Uterus Fallopian tubes Ovaries Testes These areas are protected by physical barriers and immune defenses. If microbes are found in these locations, it often indicates infection or disease, such as meningitis (in the CSF), septicemia (in the blood), or pneumonia (in the lungs). Advantages of normal flora

Microbiology and Parasitology, Optometry Notes, Optometry Semester 2

Bacterial Cell Structure and Classification

OPTOMETRY · SEMESTER 2 Bacterial Cell Structure and Classification Microbiology and Parasitology START READING NOTES Contents of This Topic Learning Objectives Definition of terms Definition of terms cont….. Characteristics of Prokaryotic Cells Characteristics of Prokaryotic Cells cont.. Bacteria parts and their functions Bacteria parts and their functions cont. Functions of Each Part of the Bacterial Cell Functions of Each Part of the Bacterial Cell cont.. Eukaryotic cell Characteristics of eukaryotic cell Characteristics of eukaryotic cell cont.. Main Distinguishing Features of Prokaryotic and Eukaryotic Cells Main Distinguishing Features of Prokaryotic and Eukaryotic Cells cont.. Major Similarities between Prokaryotes and Eukaryotes Bacteria Classification 1. Classification of Bacteria According to Morphology/Shape 1. Classification of Bacteria According to Morphology/Shape cont.… Bacteria shapes Bacilli bacteria in mass together 2. Classification of Bacteria basing on gram staining 3. Classification of Bacteria basing on spore forming 4. Classification of Bacteria basing on oxygen (air) requirement Basing biochemical reactions According to biochemical reactions cont.…. 6.Classification basing on flagella possession 7.Basing on nutritional requirements Classification of bacteria basing on pathogenicity Questions Bacteria Cell Structure and Classification Learning Objectives By the end of this session, students are expected to be able to: Define the terms bacteriology, prokaryotic cell, eukaryotic cell and bacteria Describe the characteristics of a prokaryotic cell Describe structure and functions of each part of a bacterial cell Compare prokaryotic cells and eukaryotic cells Classify bacteria according to various criteria Definition of terms Bacteriology: Is the Brach of microbiology which deals with the study of bacteria. Prokaryotic Cells Definition: Cells that lack a true nucleus and membrane-bound organelles. Structure: DNA floats freely in the cytoplasm (not enclosed in a nucleus). Have a cell membrane, cytoplasm, and ribosomes. Examples: Bacteria Definition of terms cont….. Eukaryotic Cells Definition: Cells that have a true nucleus and membrane-bound organelles. Structure: DNA is enclosed within a nucleus. Contains organelles like mitochondria, ER, Golgi apparatus, and lysosomes. More complex internal organization. Examples: Animals, plants, fungi, and protists. Size and Complexity: Larger and more complex. Definition of terms cont….. What Are Bacteria? Definition: Bacteria are microscopic, single-celled organisms with a prokaryotic cell structure, meaning they lack a true nucleus and membrane-bound organelles. Diversity: There are millions of different types of bacteria found all over the world—including in soil, water, air, and inside living organisms Characteristics of Prokaryotic Cells Prokaryotic nature/no true nucleus: Bacteria lack a true nucleus and membrane-bound organelles. Their DNA floats freely in the cytoplasm. Unicellular/single celled organisms: Each bacterium is a single celled, though some form colonies. Cell Wall made up of peptidoglycan: Most bacteria have a rigid cell wall made of peptidoglycan, which provides shape and protection. Characteristics of Prokaryotic Cells cont.. Posses different shapes: Common shapes include: Coccus (spherical) Bacillus (rod-shaped) Spirillum (spiral-shaped) Reproduction is by asexual reproduction: They reproduce asexually through binary fission, a process where one cell splits into two identical cells Characteristics of Prokaryotic Cells cont.. Metabolism: Bacteria can be autotrophic (making their own food) or heterotrophic (consuming organic material) and chemotrophs Motility: Some bacteria move using flagella, while others glide or twitch. Adaptability: Bacteria can survive extreme environments—hot springs, acidic lakes, deep-sea and vents. Ribosomes: They contain 70S ribosomes, which are smaller than those in eukaryotic cells. Pathogenicity: Some bacteria cause diseases in humans, animals, and plants, while others are beneficial (e.g., gut flora, nitrogen-fixing bacteria). Bacteria parts and their functions Structure Function Cell Wall Provides shape and protection; made of peptidoglycan in most bacteria. Cell Membrane Controls movement of substances in and out of the cell. Cytoplasm Jelly-like substance where cellular processes occur. Nucleoid Region containing the bacterial DNA (not enclosed in a nucleus). Bacteria parts and their functions cont. Nucleoid Region containing the bacterial DNA (not enclosed in a nucleus). Plasmid Small circular DNA molecules; often carry antibiotic resistance genes, uv resistance, and virulence Ribosomes (70S) Sites of protein synthesis. Flagella Tail-like structures used for movement. Pili (Fimbriae) Hair-like structures for attachment to surfaces or other cells. Bacteria parts and their functions cont. Capsule Slimy outer layer that protects against desiccation and immune attack. Inclusion Bodies Storage sites for nutrients or other substances. Endospore Dormant, tough structure formed by some bacteria to survive harsh conditions. Bacteria cell Diagram of Bacterial cell Functions of Each Part of the Bacterial Cell Cell component Description Functions Cell wall Is the outer most supporting layer which protects the internal structure of a cell Protection of internal structures (supporting layer) Gives shape to the cell Confers stability to osmotic pressure (mucopeptide toughens the cell wall) Role in division of bacterial Offers resistance to harmful effect of environment Functions of Each Part of the Bacterial Cell cont.. Capsule Is gelatinous secretion of bacteria which gets organised as a thick coat around cell wall Protection against deleterious agents (antibacterial agents) example lytic enzymes Contributes to the virulence of Flagella Are long contractile filamentous appendages They are organs of movements Functions of Each Part of the Bacterial Cell cont.. Pilli Are (Fimbriae) hair like filaments that extend from the cell surface. They are shorter and straighter than flagella They are organs of adhesion Facilitate transfer of genetic materials from one bacteria to another Cytoplasmic/ Plasma membrane Is a thin and elastic layer surrounding a cytoplasm. It is made of lipoproteins and phospholipids .Controls the movement of water, ions, nutrients and excretory substances in and out of the cell. Secrets extracellular hydrolytic enzymes Functions of Each Part of the Bacterial Cell cont.. Cytoplasm Is a viscous watery solution or soft gell containing a variety of organic and inorganic solutes Supports cellular structures like ribosome, nutrient granules, metabolites plasmids and nucleoid materials Ribosomes Are small granules and pack the whole cytoplasm. They are the sites for protein synthesis Functions of Each Part of the Bacterial Cell cont.. Nucleoid (site for DNA and RNA Is the area of the cytoplasm in which DNA and RNA are located To store genetic information Responsible for mutation of a bacteria Eukaryotic cell Eukaryotic Cells Definition: Cells that have a true nucleus and membrane-bound organelles. Structure: DNA is

Epidemiology and Biostatistics, Optometry Notes, Optometry Semester 2

Additional Study Notes: Screening Measures and Worked Data Examples

OPTOMETRY · SEMESTER 2 Additional Study Notes: Screening Measures and Worked Data Examples Epidemiology and Biostatistics Additional Study Notes — newly authored explanations and examples. These sections supplement the supplied course material. START READING NOTES Contents of This Topic Learning objectives Prevalence and incidence An original screening table Avoiding data errors Learning objectives Calculate prevalence and basic screening-test measures; identify their denominators; and distinguish a screening result from a confirmed diagnosis. Prevalence and incidence Prevalence describes existing cases in a defined population at a specified time or during a stated period. Cumulative incidence describes new cases during follow-up among people initially at risk. An incidence rate uses person-time in the denominator. Always state the population, condition definition and time frame. Original example: if 60 of 300 examined students have the defined condition on the survey date, sample prevalence is 60/300 = 20%. This estimate does not automatically describe all students in the district; the sampling process, participation and measurement method affect generalisability. An original screening table Hypothetical results for 1,000 people with a reference assessment: 90 true positives, 10 false negatives, 180 false positives and 720 true negatives. These counts are invented for calculation practice. Sensitivity = TP/(TP+FN) = 90/100 = 90%. Specificity = TN/(TN+FP) = 720/900 = 80%. Positive predictive value = TP/(TP+FP) = 90/270 ≈ 33.3%. Negative predictive value = TN/(TN+FN) = 720/730 ≈ 98.6%. The disease prevalence in this example is 100/1,000 = 10%. Despite high sensitivity, only about one-third of positive screens are true positives. Predictive values depend on the population prevalence as well as test performance. A positive screening result needs the appropriate confirmatory pathway. Avoiding data errors Keep raw observations, units and coding definitions. Use a distinct code for missing data rather than silently entering zero. Check impossible values, duplicate records and inconsistent eye or patient identifiers. Define whether an analysis is per person or per eye: two eyes from one person are not automatically independent observations. Report the sample size and denominator with every percentage. For a small or skewed dataset, examine the distribution before choosing summary measures. A median describes the middle ordered observation; a mean uses all values and is sensitive to extreme observations. Study References Source notes: Concepts of Biostatistics; Data Collection; Introduction to Epidemiology CDC: Evaluating Public Health Surveillance Systems — predictive value External references checked 13 September 2026. Worked numerical examples and teaching activities are original. ← PREVIOUS TOPICVIEW MODULE NOTESVIEW SEMESTER NOTESALL OPTOMETRY NOTES Need These Notes as PDF? Request a formatted copy for offline study, printing or revision. GET PDF NOTES ON WHATSAPP

Epidemiology and Biostatistics, Optometry Notes, Optometry Semester 2

Employ Knowledge Of Statistics In Collecting Health Data

OPTOMETRY · SEMESTER 2 Employ Knowledge Of Statistics In Collecting Health Data Epidemiology and Biostatistics START READING NOTES Contents of This Topic Related Tasks Definition Main tools used in statistical data collection 1. QUESTIONNAIRE Advantages of Questionnaire Disadvantages of Questionnaires Qualities of a good Questionnaire 2. INTERVIEW How to conduct interview Advantages of Interview Disadvantages of Interview 3. OBSERVATION (Observation checklist) Advantages of Observation Disadvantages of Observation 4. FOCUS GROUP DISCUSSIONS (FGDs) Advantages of FGDs Disadvantages of FGDs 4. CENSUS Disadvantages of Census METHODS OF DATA COLLECTION A. Primary data collection methods Sources of primary data B. Secondary data collection method Sources of secondary data Unpublished sources Factors influencing the choice of data collection method HOW TO DEVELOP DATA COLLECTION TOOLS STEPS IN DEVELOPING DATA COLLECTION TOOLS Principles in Using data collection tools EMPLOY KNOWLEDGE OF STATISTICS IN COLLECTING HEALTH DATA Related Tasks Define the term data collection. Identify tools used in statistical data collection Describe main methods of collecting statistical data Develop tools for data collection Use tools for data collection Definition DATA COLLECTION is the systematic process of gathering, measuring, and recording information from individuals, groups, observations, or sources for the purpose of analysis, interpretation and decision making. It is an important step in statistics, biostatistics, epidemiology, and research because the quality of collected data directly affects the accuracy and reliability of study findings. Main tools used in statistical data collection Questionnaires Interviews Observation checklists Focus group discussions (FGDs) Rating scales (E.g. Likert scale) Medical and Administration Records Tests and Examinations census 1. QUESTIONNAIRE Is a written set of questions answered by respondents. TYPES OF QUESTIONNAIRE Structured questionnaires- fixed responses E.g. Yes/No Semi-structured questionnaires- Both fixed and open-ended questions Unstructured questionnaires- Mostly open-ended questions Advantages of Questionnaire Can collect large amounts of data Cost effective Time-saving Standardization of responses Easy to analyze No interview bias Disadvantages of Questionnaires Low response rate Misinterpretation of questions Limited depth of information Incomplete or missing data Not suitable for illiterate population Risk of dishonest or biased response Qualities of a good Questionnaire Clear instruction Demographics Grammar Proper space for response Simple questions As per objectives Pilot study 2. INTERVIEW Is a data collection tool which involves direct verbal interaction between the researcher and participant (interviewer and interviewee) It consists of a set of pre-written questions that are asked by an interviewer and filled in by the interviewer called Interview Schedule TYPES OF INTERVIEW Structured interview- standardized set of pre-determined questions in a fixed order. Semi-structured interview- Uses a pre-prepared set of guiding questions but allows the interviewer to ask additional probing questions. Unstructured (informal) interview- An interviewer asks open-ended questions. How to conduct interview Conducted as per objectives Plan for time, duration, place, mode of recording Respect not to answer right of subject Simple and appropriate language Positive body language Advantages of Interview Provides in-depth information Clarification of questions is possible High response rate Suitable for all literacy levels Allows probing and follow up questions Allows better control over data collection process Disadvantages of Interview Time-consuming Expensive Interview bias Requires skilled personnel Possibility of response bias Limited anonymity (respondents may feel uncomfortable sharing sensitive or personal information) 3. OBSERVATION (Observation checklist) In this tool a research observe and record behaviors, events or condition using a checklist. TYPES OF OBSERVATION Overt- subjects are aware Covert- subjects are not aware Participant Non-participant Advantages of Observation Provide direct information Captures the real-life behavior Useful when subjects can not communicate Minimizes response bias Provides contextual information Useful for verifying other data sources Disadvantages of Observation Observer bias Time-Consuming Limited scope of data Hawthorne effect Expensive in some cases Ethical concerns (observing people without their knowledge may raise privacy and consent issues) 4. FOCUS GROUP DISCUSSIONS (FGDs) A small group discussion guided by a moderator to obtain opinions and perception. Number of participants Minimum- 6 participants Optimal range- 6-8 participants (most commonly used in qualitative health research) Maximum- 10-12participants Advantages of FGDs Generates rich qualitative data Encourage interaction among participants Efficient data collection method (large amount of information can be collected from several participants at the same time) Explores diverse perspectives Helps in identifying new idea or issues Useful for understanding social norms and behavior Cost effective compared to individual interview Disadvantages of FGDs Dominance by certain participants Lack of confidentiality Group pressure (conformity bias)- Individuals change their opinions, attitudes, or responses to match those of a group) Requires skilled moderator Logistical challenges 4. CENSUS It involves the complete enumeration of all members of a defined population at a specific point in time It aims to gather detailed information about demographic, social , and economic characteristics. Advantages of census No sampling bias High accuracy and reliability Detailed information Benchmark data Disadvantages of Census Very expensive Time consuming Not suitable for frequent studies METHODS OF DATA COLLECTION Statistical data collection methods are systematic approaches used to gather information for analysis, interpretation, and decision making in research, epidemiology, public health and biostatistics. These methods are broadly divided into, Primary data collection methods Secondary data collection methods A. Primary data collection methods Observation method Interview method Questionnaire method Experimental method Focus group discussion Measurement method Sources of primary data Direct observation Experiments Focus group discussion Interview Survey and field studies Measurements and tests Case studies B. Secondary data collection method Secondary data are data already collected by others for another purpose. Sources of secondary data Published sources Government reports Journals Census data WHO reports Books Unpublished sources Hospital records Institutional data base Research theses Factors influencing the choice of data collection method Research objectives Nature of data needed Available time Cost and resources Literacy level of participants Population size Accuracy required HOW TO DEVELOP DATA COLLECTION TOOLS This is the systemic process of designing instruments used to gather accurate, reliable, and relevant information for research, epidemiology, biostatistics and public health studies. Data collection tools should be carefully developed to ensure the quality of data collected. STEPS IN DEVELOPING DATA COLLECTION TOOLS There are four steps in developing data collection

Epidemiology and Biostatistics, Optometry Notes, Optometry Semester 2

Describe Concepts Of Epidemiology In Disease Prevention

OPTOMETRY · SEMESTER 2 Describe Concepts Of Epidemiology In Disease Prevention Epidemiology and Biostatistics START READING NOTES Contents of This Topic Learning Objectives Explain factors related to health and disease Epidemiology Definition of epidemiology Describe Concepts Of Epidemiology In Disease Prevention Study of the distribution (pattern of disease i.e. time, place, person). Definition of terms used in epidemiology Definition of terms cont… Definition of Health Describe natural history of disease Stages of Pathogenesis Factors in Pre-Pathogenesis Factors in Pathogenesis Outline key applications and achievements of epidemiology Achievements of epidemiology The determinants of health The determinants of health include; Key Points Key points cont… aims/Uses/Applications of epidemiology reference Describe the concepts of epidemiology in disease prevention Learning Objectives By the end of this session, students are expected to be able to: Define terms used in epidemiology Define health and disease Describe Natural History of disease Outline key applications and achievements of epidemiology Explain the determinants of health and disease -INTRODUCTION TO EPIDEMIOLOGY Explain factors related to health and disease Distinguish factors related to health and disease -INTRODUCTION TO EPIDEMIOLOGY Epidemiology The word epidemiology comes from the Greek words epi = meaning on or upon demos = meaning people logos = meaning the study of or doctrine Thus the word “epidemiology” simply means the study of what is happening to people -INTRODUCTION TO EPIDEMIOLOGY Definition of epidemiology As per perkins 1873 it is that branch of science which treats epidemics As per frost 1927 it is the science of mass phenomenon of infection disease. As per greenwood 1934 the study of any disease as a mass phenomena -INTRODUCTION TO EPIDEMIOLOGY Describe Concepts Of Epidemiology In Disease Prevention Epidemiology is often more concerned with the well-being of society as a whole, than with the well-being of individuals. In these definitions, three components are common. Study of the disease frequency(frequency of disease, disability or death and summarizing in the form of rates and ratios). -INTRODUCTION TO EPIDEMIOLOGY Study of the distribution (pattern of disease i.e. time, place, person). Study of determinants (underlying cause or risk factors). -INTRODUCTION TO EPIDEMIOLOGY Definition of epidemiology « The study of the distribution and determinants of health related states or events in specified populations and the application of this study to the control of health problems. -INTRODUCTION TO EPIDEMIOLOGY Definition of terms used in epidemiology Distribution is concerned with the frequency and pattern of health events in a population Distribution: What, who, when, and where Frequency: number, rates, and risk Quantify diseases to determine magnitude Patterns: time, place, and person -INTRODUCTION TO EPIDEMIOLOGY Definition of terms cont… Frequency: refers to the number of health events e.g. Number of cases of meningitis, Number of cases of diabetes in a population, Number of people with mental disorder in a population, Number of children under one year of age vaccinated for measles. Pattern of disease refers to the occurance of health related events or disease by time, place and person. -INTRODUCTION TO EPIDEMIOLOGY Definition of Health Health: A state of complete physical, mental, and social well-being and not merely the absence of disease or infirmity. (World Health Organization) Definition of Disease Disease: A disorder of structure or function in a human, especially one that produces specific symptoms or that affects a specific part. Definition of agent Is an microorganism/microbe that is cable of causing a disease -INTRODUCTION TO EPIDEMIOLOGY Describe natural history of disease Definition: Natural history of a disease the course of a disease over time, unaffected by human interventions. Pathogenesis: Step-by-step origination and development of a disease. -INTRODUCTION TO EPIDEMIOLOGY Stages of Pathogenesis Pre-Pathogenesis: Occurs before the onset of disease; interaction between host, agent, and environment. Pathogenesis: Interaction leads to discernible lesions or symptoms. Intervention can shorten or prevent this. Post-Pathogenesis: Residual effects persist; new diseases may arise from post-pathogenesis of others. Factors in Pre-Pathogenesis Host Factors: Age, sex, social class, personality, genetic makeup, etc. Agent Factors: Presence of an etiological factor necessary for disease. Risk Factors: Fixed (e.g., age) or modifiable (e.g., smoking). Environmental Factors: Climate, altitude, population density, sanitation, etc. Factors in Pathogenesis Host-Agent Interaction: Time between onset and discernible disease or symptoms. Outcome: May lead to recovery, disability, or death.Human Intervention can terminate or shorten this process. Outline key applications and achievements of epidemiology The applications of epidemiology include; Disease surveillance Disease investigation Risk analysis Design of prevention strategies Natural history Diagnostic testing -INTRODUCTION TO EPIDEMIOLOGY Achievements of epidemiology Community diagnosis Tools for data analysis Foundation for modern Public health Integration into various fields -INTRODUCTION TO EPIDEMIOLOGY The determinants of health Many factors combine together to affect the health of individuals and communities. Whether people are healthy or not, is determined by their circumstances and environment. -INTRODUCTION TO EPIDEMIOLOGY The determinants of health include; Income and social status Education Physical environment Social support networks Biology and genetic endowment Health services (availability and accessibility) Gender -INTRODUCTION TO EPIDEMIOLOGY Key Points As a discipline within public health, epidemiology includes the study of the frequency, patterns, and causes of health-related states or events in populations, and the application of the information gained to public health issues. In epidemiology, our “patient” is the public at large—the community—and in “treating” our patient we perform several tasks, including public health surveillance, disease investigation, analytic epidemiology, and evaluation. -INTRODUCTION TO EPIDEMIOLOGY Key points cont… Epidemiology provides us with a systematic approach for determining What, Who, Where, When, and Why/How. We use descriptive epidemiology to describe disease occurrence by person (Who), place (Where), and time (When). We use descriptive epidemiology to portray the characteristics and public health of a population or community. We use analytic epidemiology to sort out and quantify potential risk factors and causes (Why). -INTRODUCTION TO EPIDEMIOLOGY aims/Uses/Applications of epidemiology Describe the distribution of diseases and burden in a population Identification of etiological factors in pathogenesis Provide and analyze information for planning, implementation and evaluation of health status Study the natural history of disease -INTRODUCTION TO EPIDEMIOLOGY reference Bety R. K., & Jonathan A. C. S. (2003) Medical Statistics (2nd Ed.),

Epidemiology and Biostatistics, Optometry Notes, Optometry Semester 2

Concepts Of Biostatistics In Managing Health Data

OPTOMETRY · SEMESTER 2 Concepts Of Biostatistics In Managing Health Data Epidemiology and Biostatistics START READING NOTES Contents of This Topic Sub-Enabling Outcome a) Define terminologies used in biostatistics Key Concepts of Biostatistics in Health Data Management b) Data Organization and Classification c) Data Summarization (Descriptive Statistics) d) Data Analysis (Inferential Statistics) e) Interpretation of Results f) Data Presentation g) Decision-Making and Policy Formulation Summary Table b) Explain importance of biostatistics 2. Helps in Health Research and Innovation 3. Enables Disease Surveillance and Control 4. Assists in Planning and Policy Formulation 5. Facilitates Evaluation of Health Programs 6. Improves Quality of Health Data 7. Helps Understand Risk Factors for Diseases 8. Aids in Predicting Health Trends 9. Enhances Communication of Scientific Findings 10. Promotes Rational Use of Resources c) Explain importance of data stratification Importance of Data Stratification b) Helps Identify Hidden Trends and Patterns c) Supports Targeted Interventions d) Enhances Equity and Resource Allocation e) Facilitates Monitoring and Evaluation f) Reduces Bias and Misleading Conclusions g) Supports Health Research and Policy Development h) Improves Quality Improvement in Health Facilities d) Explain different types of biostatistical data Main Types of Biostatistical Data i. Nominal Data ii. Ordinal Data B. Quantitative (Numerical) Data Examples: ii. Continuous Data 3. Summary Table Importance of Knowing Data Types In Summary References….. CONCEPTS OF BIOSTATISTICS IN MANAGING HEALTH DATA Sub-Enabling Outcome 1.1.1 Describe concepts of biostatistics in managing health data Related Tasks a) Define terminologies used in biostatistics b) Explain importance of biostatistics c) Explain importance of data stratification d) Explain different types of biostatistical data a) Define terminologies used in biostatistics Definition of Biostatistics Biostatistics is the branch of statistics that applies statistical methods to biological, medical, and health-related research. It involves collecting, analyzing, interpreting, and presenting health data to support evidence-based decision-making in healthcare. Key Concepts of Biostatistics in Health Data Management a) Data Collection This involves gathering health information from sources such as surveys, hospital records, laboratory results, or public health surveillance systems. Biostatistics provides methods for designing valid sampling techniques and data collection tools to ensure accuracy and representativeness. Example: Selecting a random sample of patients to estimate disease prevalence in a community. b) Data Organization and Classification Health data are organized into categories or groups for easier analysis. Data may be quantitative (numerical) or qualitative (categorical). Biostatistics helps classify data into nominal, ordinal, interval, or ratio scales depending on the type of variable. Example: Classifying patients by blood group (nominal) or by disease severity (ordinal). c) Data Summarization (Descriptive Statistics) Biostatistics uses measures such as mean, median, mode, standard deviation, and range to summarize and describe data patterns. Graphical tools like bar charts, histograms, and pie charts help visualize the distribution of health data. Example: Calculating the average age of malaria patients or showing TB cases by region in a bar chart. d) Data Analysis (Inferential Statistics) Involves drawing conclusions or inferences about a population from a sample. Uses techniques such as hypothesis testing, correlation, regression, t-tests, and chi-square tests. Helps identify associations and causes in health outcomes. Example: Testing whether smoking is significantly associated with lung cancer incidence. e) Interpretation of Results Statistical findings are interpreted in the context of health and medical knowledge. Biostatistics helps health professionals understand whether observed patterns are due to chance or real associations. Example: Interpreting that an increase in vaccination coverage is statistically linked to reduced measles outbreaks. f) Data Presentation Biostatistics emphasizes clear presentation of results through tables, graphs, charts, and reports. Proper visualization aids communication of findings to policymakers, researchers, and the public. Example: Presenting maternal mortality trends in a line graph to guide national health planning. g) Decision-Making and Policy Formulation Statistical evidence guides public health decisions, program evaluation, and policy development. Enables assessment of intervention effectiveness, disease trends, and health system performance. Example: Using biostatistical analysis to determine whether a malaria control program effectively reduced infection rates. Summary Table Concept Description Example Data Collection Gathering health data Hospital records, surveys Data Organization Classifying data Grouping patients by diagnosis Descriptive Statistics Summarizing data Mean, median, charts Inferential Statistics Drawing conclusions Hypothesis testing Interpretation Understanding meaning Relating statistics to health outcomes Data Presentation Displaying results Graphs and tables Decision-Making Using evidence for action Health policy formulation b) Explain importance of biostatistics Importance of Biostatistics 1. Supports Evidence-Based Decision Making Biostatistics provides the numerical foundation for making informed decisions in medicine and public health. Through statistical analysis, health professionals can identify what interventions work best, evaluate treatment outcomes, and make policies based on scientific evidence rather than assumptions. Example: Determining the effectiveness of a new vaccine by comparing infection rates between vaccinated and unvaccinated groups. 2. Helps in Health Research and Innovation Biostatistics is essential in designing, conducting, and analyzing medical and public health research. It guides sample selection, data collection methods, and the correct use of statistical tests to ensure research findings are valid and reliable. Example: In clinical trials, biostatistics helps determine whether a new drug is significantly better than existing treatments. 3. Enables Disease Surveillance and Control Biostatistics helps in monitoring patterns and trends of diseases in populations. By analyzing data over time, health authorities can detect outbreaks, measure disease burden, and evaluate control measures. Example: Using statistical trends to track and control the spread of malaria or COVID-19. 4. Assists in Planning and Policy Formulation Health planners use biostatistics to forecast future health needs, allocate resources efficiently, and set realistic health targets. It ensures that public health policies are guided by quantitative evidence. Example: Using birth and death rate data to plan maternal and child health services. 5. Facilitates Evaluation of Health Programs Biostatistics provides tools for monitoring and evaluating the impact and cost-effectiveness of health programs. This helps in improving performance and ensuring accountability. Example: Assessing whether a nutrition program reduces malnutrition rates in children under five. 6. Improves Quality of Health Data Statistical principles help ensure accuracy, reliability, and validity of collected health information. This reduces errors and enhances confidence in conclusions drawn from the

Epidemiology and Biostatistics, Optometry Notes, Optometry Semester 2

Basic statistical method in compiling health data

OPTOMETRY · SEMESTER 2 Basic statistical method in compiling health data Epidemiology and Biostatistics START READING NOTES Contents of This Topic Learning Objectives Methods of statistical Definition of a Variable. Types of Variables. Quantitative (Numerical) Variables Continuous variables take any value within meaningful extremes, can take decimals, for example: Levels of Measurement Example 1: Gender (male or female) is a common nominal variable used in epidemiologic studies. Ordinal Measurement Interval Measurement Basic statistical method in compiling health data Differences Between Nominal, Ordinal, Interval and Ratio Measurements Frequency and Relative Frequency Distribution – 1 Frequency and Relative Frequency Distribution – 2 Frequency and Relative Frequency Distribution – 4 Note: A frequency distribution can be displayed as a table, a bar chart, a histogram, or a frequency polygon. Use of Tallies in Making Frequency Distribution – 1 Use of Tallies in Making Frequency Distribution – 2 Use of Tallies in Making Frequency Distribution – 3 Sputum Examination for Possible TB Infection Sample Raw Data From the above data we can summarize as follows Can We Summarize it Further? A better summarization! Use of Diagrams Pie Charts Example: 2017 TTCIH Students’ Enrollment Data Bar Chart – 1 Bar Chart – 2 Example: Why not use a pie chart in the previous table? Two-Way Tables – 1 Two-Way Tables – 2 Example Pulmonary Tuberculosis by HIV Status Two-Way Table – 3 Take Home! Basic statistical method in compiling health data. Learning Objectives By the end of this session, students are expected to be able to: Explain methods of statistical data categorization Identify levels of statistical data measurement Compile health data using appropriate statistical methods Methods of statistical data categorization Data: The raw material of statistics. Data generally consists of numbers of measurement or counting of a population sample. The methods of summarizing data (methods of descriptive statistics) vary with different types of data that are generated from different types of variables. Definition of a Variable. Variable: A term for a characteristic that is different in different members of a population or sample, such as height. This measurement is not constant, so therefore it is variable. Variables can be qualitative or quantitative, continuous or discrete. Types of Variables. There two types of variables: Qualitative (categorical) variables Quantitative (numerical) variables Qualitative (Categorical) Variables Qualitative variables do not take numerical values (e.g. gender: male/female). Outcome of disease (recovery, chronic illness, death) Hair color (black, blonde) Marital status (single, married, widowed, separate, divorced) Quantitative (Numerical) Variables Quantitative variables take numerical values, for example: Age (years): 10, 19, 45, 60 Height (cms):140, 50.6, 200 Parity: 0, 1, 2, 3, 4, 5, 6, 10. Quantitative variables are of two types: continuous and discrete Continuous variables take any value within meaningful extremes, can take decimals, for example: Height (cm): 159, 25, 160.35 Weight (kg): 71.12, 80.56 Exact age like 21 yrs 6 months and 4 days Discrete variables take only fixed values, in most cases whole numbers, for example: Parity: 0, 1, 2, 3, 4, 5, 6, 10 Levels of Measurement Variables are measured on different levels/scales The term ‘measurement’ is used here in a broad sense These are nominal, ordinal, and ratio measurements Nominal Measurement The nominal scale classifies persons or things based on a qualitative assessment of the characteristic being assessed. It neither includes information on quantity or amount nor does it indicate ‘more than’ or ‘less than’ Example 1: Gender (male or female) is a common nominal variable used in epidemiologic studies. Other examples: These used for identifying various categories that make up a given variable e.g. Religion: 1 = Muslim, 2 = Christian, 3 = Ordinal Measurement The ordinal scale also classifies persons or things based on the characteristic being assessed but does indicate ‘more than’ or ‘less than’. In this sense, it provides more information than the nominal scale. Example: Rating students’ performance as being poor, average, good, or excellent indicates how well students perform and provides a basis for comparison. However, it does not indicate how much better an excellent performance is compared to a good one. Interval Measurement The interval scale has the same characteristics of the ordinal scale – classifying persons or things based on the characteristic assessed and indicating more than or less than – but the interval scale indicates how much more than or less than. The interval scale does not indicate a true zero point, meaning that there cannot be an absence of a characteristic being measured. Basic statistical method in compiling health data Example: Temperature is an interval in that different values can tell you how much more or less. However, there is no true zero point. The value of zero in temperature does not indicate absence of temperature. Ratio Measurement The ratio scale includes all the characteristics of the interval scale but does indicate a true zero point. Example: Height and weight measurements indicate how much more or less, but also have a true zero point. A weight of zero indicates an absence of weight. Differences Between Nominal, Ordinal, Interval and Ratio Measurements Nominal Ordinal Interval Ratio Classifies persons or things based on a qualitative assessment Similar or dissimilar but not more or less Can be numeric but there is no implication of more or less Classifies persons or things based on a qualitative assessment More or less but not how much more or less Indicates how much more or less Does not contain a true zero point Cannot create meaningful ratios of these two numbers Includes all the characteristics of the interval scale, but contains a true zero point. Descriptive Methods for Qualitative Data Frequency and Relative Frequency Distribution – 1 Frequency distribution A presentation of the number of times (or the frequency) that each value (or group of values) occurs in the study population. Frequency distribution helps to give a picture of the shape of the distribution of the data. Frequency and Relative Frequency Distribution – 2 Unimodal data: Data that only has one peak. Bimodal data: Data that has two peaks. Multimodal data: Data

Epidemiology and Biostatistics, Optometry Notes, Optometry Semester 2

Apply Biostatistical Methods In Analyzing Health Data

OPTOMETRY · SEMESTER 2 Apply Biostatistical Methods In Analyzing Health Data Epidemiology and Biostatistics START READING NOTES Contents of This Topic APPLY BIOSTATISTICAL METHODS IN ANALYZING HEALTH DATA Learning tasks Definitions Data to be analyzed Methods for data analysis Data entry Data cleaning Data summarization Tools and applications for data analysis References APPLY BIOSTATISTICAL METHODS IN ANALYZING HEALTH DATA 1 Learning tasks At the end of this session, students are expected to be able to: Define data analysis Identify data to be analyzed Identify methods for data analysis Describe data entry process Explain data cleaning Explain data summarization List tools for data analysis Analyze health data 2 Definitions Data Analysis Is the systematic process of inspecting, cleaning, transforming, and modeling raw data to discover useful information, identify patterns, and support decision-making. 3 Data to be analyzed Qualitative Data: Non-numerical data from sources like interviews, open-ended survey questions, and observations Quantitative Data: Numerical data that represents quantities or measurements, such as sales figures, age, or height. 4 Methods for data analysis Data analysis has four main methods or techniques. Descriptive; Summarizes historical data to show what has happened by looking for causes and correlations. Predictive; uses historical data and models to forecast what is likely to happen in future. Diagnostic; Examines data to understand why something happened by looking for causes and correlations. Prescriptive; Recommends specific actions to be taken based on the predictions. 5 Data entry This is the manual or automated process of inputting or transferring data from physical or digital sources into an electronic format for an organization. 6 Data cleaning Is the process of finding and correcting errors, inconsistencies, and inaccuracies in a dataset to improve its quality. The goal is to ensure the data is reliable, complete, and consistent before analysis. 7 Data summarization Is the process of reducing large datasets into a more manageable and understandable form. This helps to highlight key aspects of data, such as patterns and trends without losing critical information. Techniques for summarization include calculating measures of central tendency(mean, median) and creating visual summaries like charts and graphs. 8 Tools and applications for data analysis Microsoft excel Stata R SPSS Python 9 References Kothar, C.R. (2004). Research Methodology: Methods and Techniques (2nd ed.). India: New Age International (P) Limited 10 ← PREVIOUS TOPICNEXT TOPIC →VIEW MODULE NOTESVIEW SEMESTER NOTESALL OPTOMETRY NOTES Need These Notes as PDF? Request a formatted copy for offline study, printing or revision. GET PDF NOTES ON WHATSAPP

Epidemiology and Biostatistics, Optometry Notes, Optometry Semester 2

Introduction To Epidemiology-2

OPTOMETRY · SEMESTER 2 Introduction To Epidemiology-2 Epidemiology and Biostatistics START READING NOTES Contents of This Topic Learning Objectives Epidemiology Definition od Epidemiology Definition of epidemiology Key words of the definition: Types of Epidemiology Distribution (DESCRIPTIVE EPIDEMIOLOGY) Distribution cont… Determinants (Analytic Epidemiology) Definition of Health Definition of host Host Definition of vector Definition of Reservoir Diseases with animal reservoirs (also known as zoonoses): Agent The determinants of health include: In a Specified population how does epidemiologist differ from clinicians? Applications and Achievements of epidemiology • Non-communicable Diseases(NCDs) Types of epidemiology Descriptive Epidemiology Examples of descriptive epidemiology Examples of descriptive epidemiologycont… Analytic Epidemiology Analytical Epidemiologycont… EVALUATION Key Points Key points cont… aims/Uses/Applications of epidemiology Uses/Applications of epidemiology cont… Read on reference Introduction to Epidemiology Learning Objectives By the end of this session, students are expected to be able to: Define epidemiology, health and disease Describe Types of epidemiology Describe the application of epidemiology and achievements of epidemiology Explain the determinants of health and disease -INTRODUCTION TO EPIDEMIOLOGY Epidemiology The word epidemiology comes from the Greek words epi = meaning on or upon demos = meaning people logos = meaning the study of or doctrine Thus the word “epidemiology” simply means the study of what is happening to people -INTRODUCTION TO EPIDEMIOLOGY Definition od Epidemiology As per perkins 1873 it is that branch of science which treats epidemics As per frost 1927 it is the science of mass phenomenon of infection disease. As per greenwood 1934 the study of any disease as a mass phenomena -INTRODUCTION TO EPIDEMIOLOGY Definition of epidemiology « The study of the distribution and determinants of health related states or events in specified populations and the application of this study to the control of health problems. » -INTRODUCTION TO EPIDEMIOLOGY Key words of the definition: Study  Basic science Distribution  time, place, person Determinants  Cause, risk factors Event  Health status Population  Community Application  Information for action Three closely-related components (distribution, determinants and frequency) encompass all epidemiological principles and methods -INTRODUCTION TO EPIDEMIOLOGY Types of Epidemiology DESCRIPTIVE EPIDEMIOLOGY ANALYTICAL EPIDEMIOLOGY -INTRODUCTION TO EPIDEMIOLOGY Distribution (DESCRIPTIVE EPIDEMIOLOGY) Distribution is concerned with the frequency and pattern of health events in a population Distribution: Descriptive Epidemiology What, who, when, and where Frequency: number, rates, and risk Quantify diseases to determine magnitude Patterns: time, place, and person -INTRODUCTION TO EPIDEMIOLOGY Distribution cont… Frequency: refers to the number of health events e.g. Number of cases of meningitis Number of cases of diabetes in a population Number of people with mental disorder in a population Number of children under one year of age vaccinated for measles -INTRODUCTION TO EPIDEMIOLOGY Distribution cont… Pattern of disease refers to the occurance of health related events or disease by time, place and person. Time pattern may be; seasonal, annual, monthly, weekly, daily, hourly, weekends or weekdays. Place pattern includes; residence (urban/rural), geographical variations, country variations Personal patterns includes; age, sex, gender, marital status, educational level -INTRODUCTION TO EPIDEMIOLOGY Determinants (Analytic Epidemiology) Causes and influences Compare between exposure groups to determine causal relationships Evidence for control and prevention Why and how -INTRODUCTION TO EPIDEMIOLOGY Definition of Health Health: A state of complete physical, mental, and social well-being and not merely the absence of disease or infirmity. (World Health Organization) Definition of Disease Disease: A disorder of structure or function in a human, especially one that produces specific symptoms or that affects a specific part. Definition of agent Is an microorganism/microbe that is cable of causing a disease -INTRODUCTION TO EPIDEMIOLOGY Definition of host • Host: An organism which harbors or nourishes another organism (parasite). • Intermediate host: An organism in which a parasite passes its larval or nonsexual existence. • Definitive host: An organism in which the parasite develops to an adult and sexually mature stage. -INTRODUCTION TO EPIDEMIOLOGY Host Host Is an organism capable of being infected by an agent. Examples… Host factors include: Age Sex Social class Personality Genetic factors Education Marital status Definition of vector An organism which is capable of spreading infection by conveying pathogens from one host to another. vectors of medical importance i. Mosquitoes ii. Tsetse flies iii. House flies iv. Ticks v. Mites vi. Bedbugs and Lice vii. Snails viii. Rodents ix. Fleas -INTRODUCTION TO EPIDEMIOLOGY Definition of Reservoir Reservoir: The habitat in which disease-causing organisms normally live and multiply without necessarily being affected Reservoirs can be human, animal, or environmental. o Diseases with human reservoirs: Smallpox (symptomatic) HIV (asymptomatic) Diseases with animal reservoirs (also known as zoonoses): Brucellosis (can be found in goats, sheep, cattle, pigs) Plague (can be found in rats and other wild rodents) Anthrax (can be found in cattle, sheep, goats, and other herbivores) o Environmental Histoplasmosis (caused by a fungus that is often found in areas with lots of bird/bat droppings such as caves) Legionnaires’ bacillus (caused by aquatic bacteria that grow in warm water) Note: a reservoir is different from a vector or disease carrier, which are agents of disease transmission. -INTRODUCTION TO EPIDEMIOLOGY Agent An etiological factor which are necessary for bringing about a particular disease in a susceptible host. Examples of agents are: Plasmodium Yesinia pestis Mycobacterium tuberculosis The determinants of health include: Income and social status Education Physical environment Social support networks Biology and genetic endowment Health services (availability and accessibility) Gender -INTRODUCTION TO EPIDEMIOLOGY In a Specified population how does epidemiologist differ from clinicians? Epidemiologist and clinicians differ on how they view “the patient”. Epidemiologist will be concerned with collective health of people in the community while clinician will focus on the individual case. e.g. patient with diarrheal disease- what is source?, other people infected/exposed?, interventions to prevent additional cases > epidemiologist will take account -INTRODUCTION TO EPIDEMIOLOGY -INTRODUCTION TO EPIDEMIOLOGY Applications and Achievements of epidemiology Epidemiology is used to: Describe the etiological factors in causation of disease. Study the natural history of disease, from good health to subclinical changes until occurrence of clinical disease, where the outcome can be recovery (with or without disability) or death.

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