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Isomerism – PST05106 Pharmaceutical Organic Chemistry

NTA Level 5 • Semester 1 • PST05106

Isomerism

Pharmaceutical Organic Chemistry • Source Session/Topic 7
Full source-text version: all educational wording from the extracted learning source is retained; only presenter/tutor metadata and web-layout noise are removed, while formatting is improved for readability.

Session 7: Isomerism.

Total Session Time: 60 minutes

Prerequisites

• None

Learning Tasks

By the end of this session students are expected to be able to:

• Define isomer and isomerism
• List types of isomers
• Explain types of isomers
• Explain the importance of isomerism in pharmacy

Resources Needed:

• Flip charts, marker pens, and masking tape
• Black/white board and chalk/whiteboard markers

SESSION OVERVIEW

|Step |Time |Activity/ |Content |

| | |Method | |

|1 |05 minutes |Presentation |Introduction, Learning Tasks |

|2 |15 minutes |Buzzing |Definition of Isomer and Isomerism |

| | |Presentation | |

|3 |40 minutes |Group |Types of Isomers |

| | |discussion | |

| | |Presentation | |

|4 |40 minutes |Presentation |Importance of Isomerism in Pharmacy |

| | |Brainstorming | |

|5 |10 minutes |Presentation |Key Points |

|6 | | Presentation |Evaluation |

| |10 minutes | | |

SESSION CONTENTS

STEP 1: Presentation of Session Title and Learning Tasks (5 minutes)

READ or ASK students to read the learning tasks and clarify.

ASK students if they have any questions before continuing.

STEP 2: Definition of Isomer and Isomerism (15 minutes).

|Activity: Buzzing (10 minutes) |

| |

|ASK students to pair up and buzz on the following question for 5 |

|minutes |

| |

|What is an isomer? |

|What is isomerism? |

|ALLOW pairs to respond on the question. |

| |

|WRITE their response on the flip chart/board. |

| |

|CLARIFY and SUMMARIZE by using the content in the table 1 below |

• Isomers are compound having same molecular formula but different

structural formula

• Isomerism is the existence of a compound with the same molecular

formula but different structural formula

STEP 3: Types of Isomerism (40 minutes).

|Activity: Small Group Discussion (20 minutes) |

| |

|DIVIDE students into small groups |

| |

|ASK students to discuss in groups on the following questions |

|What are the types of isomerism |

| |

|[pic]REFER Students to Book |

| |

|ALLOW students to discuss for 15 minutes |

| |

|ALLOW each group to present for 5 minutes |

| |

|CLARIFY and SUMMARIZE by using the contents below |

The following are the descriptions of types of isomerism;

• Geometric isomerism
• Structural isomerism
• Constitutional isomerism
• Sterioisomerism
• Geometric isomerism.

o Arises due to restricted rotation across the C-C double bonds.

o Occurs only when two atoms/groups attached to each carbon of the

double bond are different from one another.

o This type of isomerism is also known as cis-trans isomerism.

o The cis-isomer has like groups on the same side of the double bond,

whereas the trans-isomer has like group on opposite sides of the

double bond.

Example,

[pic]

o Cis Butene (the methyl groups are on the same side)

[pic]

o Trans Butene (the methyl groups are on the opposite side)

o Another way to name the cis-trans isomers is to use the Z and E

nomenclature

[pic] E

E = Entgegen in German, Z =

Zusammen, means together

which means on opposite sides.

• Structural isomerism.

o These are Isomers which have the atoms of their molecules linked in a

different order

o The structural isomerism is further subdivided in the following

categories;

▪ Chain Isomerism
▪ Positional Isomerism
▪ Functional Group Isomerism

Chain Isomerism

• Chain isomers are the compounds having the same molecular formula but

different arrangement of carbon chain within the molecule.

• Chain isomers are also known as skeletal isomers or nuclear isomers.
• Chain isomers of the same compound are very similar.
• There may be small difference in physical properties such as melting or

boiling point due to different strengths of intermolecular bonding.

• Their chemistry is likely to be identical.

[pic]

Positional Isomerism

• Position isomers are the compounds which have the same molecular formula

and same carbon skeleton but differ in the position of attached atoms or

groups or in position of multiple bonds.

• Positional isomers are also usually similar.
• There are slight physical differences, but the chemical properties are

usually very similar.

• However, occasionally, positional isomers can have quite different

properties.

[pic]

• A simple example of isomerism is given by propanol:
• it has the formula C3H8O (or C3H7OH) and two isomers propan-1-ol (n-

propyl alcohol; I) and propan-2-ol (isopropyl alcohol; II)

• Note that the position of the oxygen atom differs between the two: it is

attached to an end carbon in the first isomer and to the center carbon in

the second.

• The number of possible isomers increases rapidly as the number of atoms

increases; for example, the next largest alcohol, named butanol (C4H10O),

has four different structural isomers.

[pic]

Functional Group Isomers

• Functional group isomers are the compounds having the same molecular

formula but different functional groups.

• Functional group isomers are likely to be both physically and

chemically dissimilar.

[pic]

• Constitutional Isomerism.

o Isomers that differ in connectivity are called constitutional

(sometimes structural) isomers.

o They have the same parts, but those parts are attached to each other

differently.

o The bracelets of red and green beads mentioned above are analogous to

constitutional isomers.

o The simplest hydrocarbons—methane (CH4), ethane (CH3CH3), and propane

(CH3CH2CH3)—have no constitutional isomers, as there is no other way

to connect the carbons and hydrogens of these molecules consistent

with the tetravalency of carbon and the univalency of hydrogen.

[pic]

o However, there are two different butanes, C4H10, and these two

molecules, called butane and isobutane, are constitutional isomers.

o They are different molecules with different chemical and physical

properties.

o Butane has its four carbon atoms bonded in a continuous chain.

Isobutane has a branched structure.

o [pic]

o The number of possible constitutional isomers increases greatly with

the number of available atoms.

o There are only two butanes, but there are three pentanes (C5H12), 18

octanes (C8H18), and no fewer than 366,319 constitutional isomers of

the hydrocarbon containing 20 carbon atoms and 42 hydrogens.

• Stereoisomers.

o Stereoisomers are isomers that have the same composition (that is, the

same parts) but that differ in the orientation of those parts in space.

o There are two kinds of stereoisomers:

▪ enantiomers
▪ Enantiomers are stereoisomers which are related to each as

an object and its non-superimposible mirror image, like one’s

hands.

▪ Enantiomers are also called optical isomers.
▪ Diastereomers.
▪ Diastereomers (sometimes called diastereoisomers) are a

type of a stereoisomer.

▪ Diastereomerism occurs when two or more stereoisomers of a

compound have different configurations at one or more (but

not all) of the equivalent (related) stereocenters and are

not mirror images of each other.

▪ When two diastereoisomers differ from each other at only

one stereocenter they are epimers. Each stereocenter gives

rise to two different configurations and thus increases the

number of stereoisomers by a factor of two.

▪ Diastereomers differ from enantiomers in that the latter

are pairs of stereoisomers that differ in all stereocenters

and are therefore mirror images of one another.

o Enantiomers of a compound with more than one stereocenter are also

diastereomers of the other stereoisomers of that compound that are not

their mirror image.

o Diastereomers have different physical properties (unlike enantiomers) and

different chemical reactivity.

[pic]

Fig. Isomerism

[pic]

STEP 4: The importance of Isomerism in Pharmacy (40 minutes).

|Activity: Brainstorming (5 minutes) |

| |

|Ask students to brainstorm on the following question: |

| |

|What is the importance of isomerism in pharmacy? |

| |

|ALLOW few students to respond |

| |

|WRITE their responses on the flip chart/ board |

| |

|CLARIFY and SUMMARISE by using the content below |

• Drug isomerism has opened a new era of drug development.
• Currently, knowledge of isomerism has helped us in introducing safer

and more effective drug alternatives of the newer as well as existing

drugs.

• Many existing drugs have gone chiral switch i.e., switching from

racemic mixture to one of its isomers.

• Cetrizine to levocetrizine is one of such examples, where effective

and safer drug has been made available.

• Isomerism can lead to different therapeutic uses and adverse drug

reactions like Quinine has antimalarial activity while quinidine has

an antiarrythmic property.

• Other examples include the following;
o L-sotalol is alpha-blocker while d-sotalol is antiarrythmic;

Levomethorphan is a potent opiod analgesic while dextromethorphan

is a cough suppressant

o R-Thalidomide is sedative while S-Thalidomide has been shown

teratogenic effects;

o R-Naproxen is used for arthralgic pain while S-Naproxen is

teratogenic

o D-Ethambutol is antituberculosis drug while L-ethambutol has been

found to cause blindness

o L-dopa used in treatment for Parkinson's disease has an isomer D-

dopa which has never been used because it causes deficiency of

white blood cells and thus susceptibility to infections.

STEP 5: Key Points (10 minutes).

• Isomers are compound having same molecular formula but different

structural formula.

• Types of isomerism include Geometric isomerism, Structural isomerism,

Constitutional isomerism and Stereoisomerism.

• Isomerism finds its importance in pharmacy, as isomers differ in their

pharmacokinetic and pharmacodyanmic properties which has helped in

introducing safer and more effective drug alternatives of the newer as

well as existing drugs.

STEP 6: Evaluation (10 minutes)

• What is isomerism?
• What are the types of isomerism?
• What is the importance of isomerism in Pharmacy?

References

Ternay, A.L (1976). Contemporary Organic Chemistry. Philadelphia, United

States: W.B. Saunders Co.

Morrison R.T and Boyd R N (1997). Organic Chemistry (6th Ed.). New Delhi,

India: Prentice Hall of India

Graham Solomon et al (2014). Organic Chemistry (11th Ed.). New Jeysey,

United States: John Willey and Sons.

Rama Rao Nadendla (2005). Principles of Pharmaceutical Organic Chemistry.

New Delhi, India: MacMillan Publishers

Bruice Y (2013). Organic Chemistry (7th ed.). New York, United States:

Prentice Hall Pearson.

Delgado J. N. Et al (1998). Wilson and Gisvold's Textbook of Organic

Medicinal and Pharmaceutical Chemistry (10th Ed.). California, United

States: Lippincott Williams

Bhassin S.K, Gupta R. (2013). Pharmaceutical organic chemistry (E-book

Kindle edition). New Delhi, India: Elsevier Publishing Services

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