Classification and importance of Micro organisms – PST05103 Pharmaceutical Microbiology

NTA Level 5 • Semester 1 • PST05103

Classification and importance of Micro organisms

Pharmaceutical Microbiology • Source Session/Topic 2
Full source-text version: all educational wording from the extracted learning source is retained; only presenter/tutor metadata and web-layout noise are removed, while formatting is improved for readability.

Session 2: Classification and importance of Micro organisms

Total Session Time: 120 minutes

Pre-requisites

• Human anatomy and physiology

Students Learning Tasks

By the end of this session students are expected to be able to:

• Differentiate between eukaryotic and prokaryotic cells
• Explain classification and nomenclature of microorganisms
• Explain the importance of microorganisms in pharmacy

Resources Needed:

• Flip charts, marker pens, and masking tape
• Black/white board and chalk/whiteboard markers

SESSION OVERVIEW

|Step |Time |Activity/ |Content |

| | |Method | |

|1 |5 minutes |Presentation |Introduction, Learning Tasks |

|2 | |Small group |Differences between eukaryotic and|

| |30 minutes |discussion/ |prokaryotic cells |

| | |Presentation | |

|3 |50 minutes |Buzzing/ |Classification and nomenclature of|

| | |Presentation |microorganisms |

|4 |25 minutes |Presentation |Importance of microorganisms in |

| | | |pharmacy |

|5 |5 minutes |Presentation |Key Points |

| 6|5 minutes |Presentation |Evaluation |

SESSION CONTENTS

STEP 1: Presentation of Session Title and Learning Tasks (5 minutes)

READ or ASK students to read the learning tasks and clarify

ASK students if they have any questions before continuing

STEP 2: Differences between eukaryotic and prokaryotic cells (30 minutes)

|Activity: Small Group Discussion (10 minutes) |

| |

|DIVIDE students into small manageable groups |

| |

|ASK students to discuss on the following question |

|What are the differences between eukaryotic and prokaryotic cells? |

| |

|ALLOW students to discuss for 10 minutes |

| |

|ALLOW few groups to present and the rest to add points not mentioned|

| |

| |

|CLARIFY and SUMMARIZE by using the contents below |

All living things are made up of cells and cells are the smallest

units of any living organism. All cells are grouped into two major

groups, eukaryotic and prokaryotic cells.

The differences between eukaryotic cells and prokaryotic cells are

summarized as follow:

|Eukaryotic Cells |Prokaryotic Cells |

|Larger than eukaryotic cells |Small than eukaryotic cells |

|(>10um) |(<5um) |

| have no rigid cell wall | have rigid cellwall |

|Always have nucleus and other |No nucleus or any other |

|membrane-bound organelles |membrane-bound organelles |

|DNA is linear |DNA is circular, |

|Ribosomes are larger (80S) |Ribosomes are small (70S) |

|Have cytoskeleton |No cytoskeleton |

|Move by cilia or flagella |Move by flagella |

|Cell division is by mitosis or |Cell division is by binary |

|meiosis |fission |

|Reproduction is asexual or sexual |Reproduction is always asexual |

Figure 2.1: Prokaryotic Cell

[pic]

Figure 2.2: Eukaryotic Cell

[pic]

STEP 3: Classification and nomenclature of microorganisms (50 minutes)

|Activity: Buzzing (5 minutes) |

| |

|ASK students to pair up and buzz on the following question for 2 |

|minutes |

| |

|What is classification of microorganisms? |

| |

|ALLOW few pairs to respond and let other pairs to add on points not |

|mentioned |

| |

|WRITE their response on the flip chart/board |

| |

|CLARIFY and SUMMARIZE by using the content below |

• Microorganisms or microbes are microscopic organisms that exist as

unicellular, multicellular, or cell clusters

• Microorganisms are widespread in nature and are beneficial to life, but

some can cause serious harm

• Microorganisms are systematically classified into taxonomic categories

to facilitate research and communication

• Biologic classification helps identify each form according to common

properties (similarities) using a set of rules and an estimate as to how

closely related it is to a common ancestor (evolutionary relationship)

in a way to create an order

• The first, largest, and most inclusive group under which organisms are

classified is called a domain

o The domain has three subgroups: bacteria, archae, and eukarya

o This first group defines whether an organism is a prokaryote or a

eukaryote

• The second largest group is called a kingdom

o There are five major kingdoms and include prokaryota (e.g. archae

and bacteria), protoctista (e.g. protozoa and algae), fungi,

plantae, and animalia

o A kingdom is further split into phylum or division, class, order,

family, genus, and species, which is the smallest group

• The classification of microorganisms in these taxa employ;
• Microscopic morphology
• Macroscopic morphology – colony appearance
• Physiological / biochemical characteristics
• Chemical analysis
• Serological analysis
• Genetic and molecular analysis

o G + C base composition

o DNA analysis using genetic probes

o Nucleic acid sequencing and rRNA analysis

• Generally, microorganisms can be divided into six major types: bacteria,

archaea, fungi, protozoa, algae, and viruses

• Bacteria

o Bacteria are unicellular organisms described as prokaryotic because

they lack a nucleus

o They exist in four major shapes: bacillus (rod shape), coccus

(spherical shape), spirilla (spiral shape), and vibrio (curved

shape)

o Most bacteria have a peptidoglycan cell wall; they divide by binary

fission; and they may possess flagella for motility

o The difference in their cell wall structure is a major feature used

in classifying them

o According to the way their cell walls structure stains, bacteria

can be classified using the Gram-staining as either

▪ Gram-positive
▪ Gram-negative

o Bacteria can be further divided based on their response to gaseous

oxygen into the following groups:

▪ aerobic (living in the presence of oxygen)
▪ anaerobic (living without oxygen)
▪ facultative anaerobes (can live in both environments)

o According to the way they obtain energy, bacteria are classified as

heterotrophs or autotrophs

▪ Autotrophs make their own food by using the energy of

sunlight or chemical reactions, in which case they are called

chemoautotrophs

▪ Heterotrophs obtain their energy by consuming other

organisms. Bacteria that use decaying life forms as a source of

energy are called saprophytes.

• Viruses

o Viruses are noncellular entities that consist of a nucleic acid

core (DNA or RNA) surrounded by a protein coat

o Although viruses are classified as microorganisms, they are not

considered living organisms

o Viruses cannot reproduce outside a host cell and cannot metabolize

on their own. Viruses often infest prokaryotic and eukaryotic cells

causing diseases

• Fungi

o Fungi (mushroom, moulds, and yeasts) are eukaryotic cells (with a

true nucleus). Most fungi are multicellular and their cell wall is

composed of chitin

o They obtain nutrients by absorbing organic material from their

environment (decomposers), through symbiotic relationships with

plants (symbionts), or harmful relationships with a host

(parasites)

o They form characteristic filamentous tubes called hyphae that help

absorb material

o The collection of hyphae is called mycelium

o Fungi reproduce by releasing spores

• Protozoa

o Protozoa are unicellular aerobic eukaryotes

o They have a nucleus, complex organelles, and obtain nourishment by

absorption or ingestion through specialized structures

o They make up the largest group of organisms in the world in terms

of numbers, biomass, and diversity

o Their cell walls are made up of cellulose

o Protozoa have been traditionally divided based on their mode of

locomotion: flagellates produce their own food and use their whip-

like structure to propel forward, ciliates have tiny hair that beat

to produce movement, amoeboids have false feet or pseudopodia used

for feeding and locomotion

• Algae

o Algae, also called cyanobacteria or blue-green algae, are

unicellular or multicellular eukaryotes that obtain nourishment by

photosynthesis

o They live in water, damp soil, and rocks and produce oxygen and

carbohydrates used by other organisms

o It is believed that cyanobacteria are the origins of green land

plants

• Nomenclature of microorganisms

o Uses binomial (scientific) nomenclature in which two names:

▪ Genus – a noun and always capitalized
▪ species – an adjective and written in lowercase
• Both names are italicized when typed or underlined when

handwritten

▪ Examples:
• Staphylococcus aureus (S. aureus)
• Bacillus subtilis (B. subtilis)
• Escherichia coli (E. coli)

STEP 4: Importance of micro organisms in Pharmacy (25 minutes)

Microorganisms are very important in pharmacy. Importance of

microorganisms in pharmacy includes;

• Microorganisms cause diseases in human being. Studying them is

important to prevent, treat and prevent infections

• Microorganisms are used in monitoring sterilization process e.g.

biological indicators such as spores of Bacillus stearothermophilus

• Provision of knowledge on the use of microorganisms in production of

substances useful in pharmacy and medicine

o Production of antibiotics such as Penicillin

o Production of hormonal products such as Insulin

o Production of vaccines such as Tuberculosis vaccine

STEP 5: Key Points (5 minutes)

• Microorganisms are minute living things that are too small to be seen

by the naked eye

• Microorganisms include bacteria, archaea, protozoa, algae, fungi,

viruses and multicellular animal parasites

• Microorganisms are named by two names, generic and specific name
• Microorganisms are important in pharmacy; they are used to produce

medicines such as antibiotics

STEP 6: Evaluation (5 minutes)

• What is classification?
• How are organisms named?
• What is the importance of microbiology in pharmacy?

References

Hugo and Russell (2011), Pharmaceutical Microbiology 8th Edition, Willey-

Blackwel publications

Karen C. Carroll et al (2013); Jawetz, Melnick and Adelberg’s Medical

Microbiology 26th Ed. McGraw Hill Co. Inc.

Greenwood et al (2012); Medical Microbiology, 18th edition Churchill

Livingstone

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